Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-590-3p in CA Breast Sorlie Cluster 20 Table contains all genes in the CA Breast Sorlie cluster number 20. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-590-3p 56987 BBX bobby sox homolog (Drosophila) [Source:HGNC Symbol;Acc:14422] zzz999 81671 VMP1 vacuole membrane protein 1 [Source:HGNC Symbol;Acc:29559] zzz999 8780 RIOK3 RIO kinase 3 (yeast) [Source:HGNC Symbol;Acc:11451] T 84447 SYVN1 synovial apoptosis inhibitor 1, synoviolin [Source:HGNC Symbol;Acc:20738] zzz999 894 CCND2 cyclin D2 [Source:HGNC Symbol;Acc:1583] T 22949 PTGR1 prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429] zzz999 8082 SSPN sarcospan (Kras oncogene-associated gene) [Source:HGNC Symbol;Acc:11322] T 65986 ZBTB10 zinc finger and BTB domain containing 10 [Source:HGNC Symbol;Acc:30953] P T 2098 ESD esterase D [Source:HGNC Symbol;Acc:3465] zzz999 6093 ROCK1 Rho-associated, coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:10251] T 7357 UGCG UDP-glucose ceramide glucosyltransferase [Source:HGNC Symbol;Acc:12524] zzz999 4297 MLL myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) [Source:HGNC Symbol;Acc:7132] zzz999 538 ATP7A ATPase, Cu++ transporting, alpha polypeptide [Source:HGNC Symbol;Acc:869] T 7716 VEZF1 vascular endothelial zinc finger 1 [Source:HGNC Symbol;Acc:12949] T 55031 USP47 ubiquitin specific peptidase 47 [Source:HGNC Symbol;Acc:20076] P T 8500 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 [Source:HGNC Symbol;Acc:9245] P T 84250 ANKRD32 ankyrin repeat domain 32 [Source:HGNC Symbol;Acc:25408] P T 283234 CCDC88B coiled-coil domain containing 88B [Source:HGNC Symbol;Acc:26757] zzz999 5813 PURA purine-rich element binding protein A [Source:HGNC Symbol;Acc:9701] zzz999 79048 SECISBP2 SECIS binding protein 2 [Source:HGNC Symbol;Acc:30972] zzz999 2123 EVI2A ecotropic viral integration site 2A [Source:HGNC Symbol;Acc:3499] T 84909 C9orf3 chromosome 9 open reading frame 3 [Source:HGNC Symbol;Acc:1361] zzz999 50618 ITSN2 intersectin 2 [Source:HGNC Symbol;Acc:6184] zzz999 10730 YME1L1 YME1-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:12843] P T 1556 zzz999 zzz999 zzz999 4659 PPP1R12A protein phosphatase 1, regulatory (inhibitor) subunit 12A [Source:HGNC Symbol;Acc:7618] zzz999 91137 SLC25A46 solute carrier family 25, member 46 [Source:HGNC Symbol;Acc:25198] T 989 SEPT7 septin 7 [Source:HGNC Symbol;Acc:1717] T 113277 TMEM106A transmembrane protein 106A [Source:HGNC Symbol;Acc:28288] T 4520 MTF1 metal-regulatory transcription factor 1 [Source:HGNC Symbol;Acc:7428] zzz999 27020 NPTN neuroplastin [Source:HGNC Symbol;Acc:17867] P T 4000 LMNA lamin A/C [Source:HGNC Symbol;Acc:6636] zzz999 51199 NIN ninein (GSK3B interacting protein) [Source:HGNC Symbol;Acc:14906] T 55186 SLC25A36 solute carrier family 25, member 36 [Source:HGNC Symbol;Acc:25554] T 10066 SCAMP2 secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:10564] zzz999 7175 TPR translocated promoter region (to activated MET oncogene) [Source:HGNC Symbol;Acc:12017] zzz999 8653 DDX3Y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Source:HGNC Symbol;Acc:2699] zzz999 3122 HLA-DRA major histocompatibility complex, class II, DR alpha [Source:HGNC Symbol;Acc:4947] zzz999 9107 MTMR6 myotubularin related protein 6 [Source:HGNC Symbol;Acc:7453] T 3709 ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181] T 3689 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) [Source:HGNC Symbol;Acc:6155] zzz999 929 CD14 CD14 molecule [Source:HGNC Symbol;Acc:1628] zzz999 100132476 KRTAP4-7 keratin associated protein 4-7 [Source:HGNC Symbol;Acc:18898] zzz999 161582 DYX1C1 dyslexia susceptibility 1 candidate 1 [Source:HGNC Symbol;Acc:21493] zzz999 548645 DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 [Source:HGNC Symbol;Acc:34187] P T 30849 PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 [Source:HGNC Symbol;Acc:8982] T 22926 ATF6 activating transcription factor 6 [Source:HGNC Symbol;Acc:791] zzz999 83737 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) [Source:HGNC Symbol;Acc:13890] P T 375 ARF1 ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] zzz999 4905 NSF N-ethylmaleimide-sensitive factor [Source:HGNC Symbol;Acc:8016] zzz999 23365 ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 [Source:HGNC Symbol;Acc:14193] P T 8621 CDK13 cyclin-dependent kinase 13 [Source:HGNC Symbol;Acc:1733] zzz999 55331 ACER3 alkaline ceramidase 3 [Source:HGNC Symbol;Acc:16066] P T 5950 RBP4 retinol binding protein 4, plasma [Source:HGNC Symbol;Acc:9922] zzz999 7586 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101] T 5290 PIK3CA phosphoinositide-3-kinase, catalytic, alpha polypeptide [Source:HGNC Symbol;Acc:8975] T 23303 KIF13B kinesin family member 13B [Source:HGNC Symbol;Acc:14405] zzz999 51449 PCYOX1 prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:20588] T 81689 ISCA1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660] T 7110 TMF1 TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:11870] P T 7707 ZNF148 zinc finger protein 148 [Source:HGNC Symbol;Acc:12933] P T 9086 EIF1AY eukaryotic translation initiation factor 1A, Y-linked [Source:HGNC Symbol;Acc:3252] zzz999 9728 SECISBP2L SECIS binding protein 2-like [Source:HGNC Symbol;Acc:28997] T 55603 FAM46A family with sequence similarity 46, member A [Source:HGNC Symbol;Acc:18345] P T 2952 GSTT1 glutathione S-transferase theta 1 [Source:HGNC Symbol;Acc:4641] zzz999 4301 MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 [Source:HGNC Symbol;Acc:7137] T 6938 TCF12 transcription factor 12 [Source:HGNC Symbol;Acc:11623] zzz999 4808 NHLH2 nescient helix loop helix 2 [Source:HGNC Symbol;Acc:7818] zzz999 552 AVPR1A arginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:895] T 3588 IL10RB interleukin 10 receptor, beta [Source:HGNC Symbol;Acc:5965] T 7158 TP53BP1 tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:11999] zzz999 8546 AP3B1 adaptor-related protein complex 3, beta 1 subunit [Source:HGNC Symbol;Acc:566] T 6738 TROVE2 TROVE domain family, member 2 [Source:HGNC Symbol;Acc:11313] T 9989 PPP4R1 protein phosphatase 4, regulatory subunit 1 [Source:HGNC Symbol;Acc:9320] P T 57515 SERINC1 serine incorporator 1 [Source:HGNC Symbol;Acc:13464] T 10550 ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 [Source:HGNC Symbol;Acc:16937] T 51773 RSF1 remodeling and spacing factor 1 [Source:HGNC Symbol;Acc:18118] zzz999 3612 IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 [Source:HGNC Symbol;Acc:6050] T 51585 PCF11 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30097] zzz999 5529 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform [Source:HGNC Symbol;Acc:9313] P T 2908 NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) [Source:HGNC Symbol;Acc:7978] T 126282 TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 [Source:HGNC Symbol;Acc:28279] T 7060 THBS4 thrombospondin 4 [Source:HGNC Symbol;Acc:11788] zzz999 23190 UBXN4 UBX domain protein 4 [Source:HGNC Symbol;Acc:14860] P T 55285 RBM41 RNA binding motif protein 41 [Source:HGNC Symbol;Acc:25617] zzz999 5978 REST RE1-silencing transcription factor [Source:HGNC Symbol;Acc:9966] zzz999 10746 MAP3K2 mitogen-activated protein kinase kinase kinase 2 [Source:HGNC Symbol;Acc:6854] T 9821 RB1CC1 RB1-inducible coiled-coil 1 [Source:HGNC Symbol;Acc:15574] T 10668 CGRRF1 cell growth regulator with ring finger domain 1 [Source:HGNC Symbol;Acc:15528] T 7709 ZBTB17 zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:12936] zzz999 1404 HAPLN1 hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:2380] zzz999 51306 FAM13B family with sequence similarity 13, member B [Source:HGNC Symbol;Acc:1335] P 1230 CCR1 chemokine (C-C motif) receptor 1 [Source:HGNC Symbol;Acc:1602] zzz999 386618 KCTD4 potassium channel tetramerisation domain containing 4 [Source:HGNC Symbol;Acc:23227] T 65125 WNK1 WNK lysine deficient protein kinase 1 [Source:HGNC Symbol;Acc:14540] P T 6646 SOAT1 sterol O-acyltransferase 1 [Source:HGNC Symbol;Acc:11177] T 56160 NDNL2 necdin-like 2 [Source:HGNC Symbol;Acc:7677] T 4750 NEK1 NIMA (never in mitosis gene a)-related kinase 1 [Source:HGNC Symbol;Acc:7744] T 9126 SMC3 structural maintenance of chromosomes 3 [Source:HGNC Symbol;Acc:2468] zzz999 4205 MEF2A myocyte enhancer factor 2A [Source:HGNC Symbol;Acc:6993] P T 1778 DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 [Source:HGNC Symbol;Acc:2961] zzz999 9360 PPIG peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650] zzz999 5891 RAGE renal tumor antigen [Source:HGNC Symbol;Acc:9833] zzz999 120103 SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 [Source:HGNC Symbol;Acc:19660] T 440138 ALG11 asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) [Source:HGNC Symbol;Acc:32456] T 3799 KIF5B kinesin family member 5B [Source:HGNC Symbol;Acc:6324] zzz999 7095 SEC62 SEC62 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11846] P T 7994 MYST3 MYST histone acetyltransferase (monocytic leukemia) 3 [Source:HGNC Symbol;Acc:13013] P T 4121 MAN1A1 mannosidase, alpha, class 1A, member 1 [Source:HGNC Symbol;Acc:6821] T 23186 RCOR1 REST corepressor 1 [Source:HGNC Symbol;Acc:17441] T 9169 SCAF11 SR-related CTD-associated factor 11 [Source:HGNC Symbol;Acc:10784] P T 1388 ATF6B activating transcription factor 6 beta [Source:HGNC Symbol;Acc:2349] zzz999 5966 REL v-rel reticuloendotheliosis viral oncogene homolog (avian) [Source:HGNC Symbol;Acc:9954] T 64398 MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) [Source:HGNC Symbol;Acc:18669] P T 90488 C12orf23 chromosome 12 open reading frame 23 [Source:HGNC Symbol;Acc:28281] P T 1593 CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2605] zzz999 51742 ARID4B AT rich interactive domain 4B (RBP1-like) [Source:HGNC Symbol;Acc:15550] P T 55589 BMP2K BMP2 inducible kinase [Source:HGNC Symbol;Acc:18041] T 4090 SMAD5 SMAD family member 5 [Source:HGNC Symbol;Acc:6771] P T 9931 HELZ helicase with zinc finger [Source:HGNC Symbol;Acc:16878] P T 3998 LMAN1 lectin, mannose-binding, 1 [Source:HGNC Symbol;Acc:6631] T 162394 SLFN5 schlafen family member 5 [Source:HGNC Symbol;Acc:28286] P T 23507 LRRC8B leucine rich repeat containing 8 family, member B [Source:HGNC Symbol;Acc:30692] T 8943 AP3D1 adaptor-related protein complex 3, delta 1 subunit [Source:HGNC Symbol;Acc:568] zzz999 55854 ZC3H15 zinc finger CCCH-type containing 15 [Source:HGNC Symbol;Acc:29528] T

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